Difference between revisions of "Links to Sequence Analysis Tools"
(Created page with ' http://www.broadinstitute.org/gsa/wiki/index.php/Base_quality_score_recalibration Quality Score Calibration Tool at the Broad Institute.') |
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| + | [[http://www.broadinstitute.org/gsa/wiki/index.php/Base_quality_score_recalibration Quality Score Calibration Tool]] at the Broad Institute. | ||
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| + | == Base Calling Tools == | ||
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| + | Erlich, Y., Mitra, P.P., delaBastide, M., McCombie, W.R., Hannon, G.J. (2008) Alta-Cyclic: A self-optimizing base caller for next-generation sequencing. ''Nature Methods'' '''5''':679-682 | ||
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| + | Kao, W.-C., Stevens, K., Song, Y.S. (2009) BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing. ''Genome Research'' '''19''':1884-1895 | ||
| − | + | Whiteford, N., Skelly, T., Curtis, C., Ritchie, M.E., Löhr, A., Zaranek, A.W., Abnizova, I., Brown, C. (2009) | |
| + | Swift: Primary data analysis for the Illumina Solexa sequencing platform. ''Bioinformatics'' '''25''':2194-2199 | ||
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| + | Rougemont, J., Amzallag, A., Iseli, C., Farinelli, L., Xenarios, I., Naef, F. (2008) Probabilistic base calling of Solexa sequencing data. ''BMC Bioinformatics'' '''9''':Article 431 | ||
Revision as of 13:06, 28 January 2010
[Quality Score Calibration Tool] at the Broad Institute.
Base Calling Tools
Erlich, Y., Mitra, P.P., delaBastide, M., McCombie, W.R., Hannon, G.J. (2008) Alta-Cyclic: A self-optimizing base caller for next-generation sequencing. Nature Methods 5:679-682
Kao, W.-C., Stevens, K., Song, Y.S. (2009) BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing. Genome Research 19:1884-1895
Whiteford, N., Skelly, T., Curtis, C., Ritchie, M.E., Löhr, A., Zaranek, A.W., Abnizova, I., Brown, C. (2009) Swift: Primary data analysis for the Illumina Solexa sequencing platform. Bioinformatics 25:2194-2199
Rougemont, J., Amzallag, A., Iseli, C., Farinelli, L., Xenarios, I., Naef, F. (2008) Probabilistic base calling of Solexa sequencing data. BMC Bioinformatics 9:Article 431
