Changes

| Show Annotation  

| Show Annotation  

| showAnnot=T showRefsnpAnnot=T annotPch=”21,24,24,25,22,22,8,7”  

| showAnnot=T showRefsnpAnnot=T annotPch=”21,24,24,25,22,22,8,7”  

| SNP annotation is available for all 1000G SNPs (Aug 2009 release) and can be displayed on the plot using this option. On the website, various annotation options can be turned on or off.<br>Certain annotation fields can be turned on or off using the annotPch command. To show several categories of SNPs as the same symbol, simply give the same R symbol code for those categories (e.g. annotPch=”21,24,24,25,22,22,8,7”). The category listings, together with their default symbol setting are;<br>Framestop (24, triangle)<br>Splice (24, triangle)<br>NonSynonymous (25, inverted triangle)<br>Synonymous (22, square)<br>UTR (22, square)<br>TFBScons (8, star)<br>MCS44 Placental (7, square with diagonal lines)<br>None-of-the-above (21, filled circle). <br>For more information about the annotation categories used, please see http://research.nhgri.nih.gov/tools/unisnp/?rm=ohelp

| SNP annotation is available for all 1000G SNPs (Aug 2009 release) and can be enabled with the showAnnot=T option. The annotPch command allows you to customize the R plotting symbol used for each kind of SNP; it is okay to use the same symbol for more than one category. The annotation categories, together with their default symbol setting are: Framestop (24, triangle), Splice (24, triangle), NonSynonymous (25, inverted triangle), Synonymous (22, square), UTR (22, square), TFBScons (8, star), MCS44 Placental (7, square with diagonal lines) and None-of-the-above (21, filled circle). For more information about these annotation categories used, please see http://research.nhgri.nih.gov/tools/unisnp/?rm=ohelp

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| Recombination Rate Overlay  

| Recombination Rate Overlay