Difference between revisions of "MaCH"

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== Options ==
 
== Options ==
 +
 
Input Files:
 
Input Files:
 
--datfile
 
--datfile
Marker information file as described in section 3.
+
Marker information file for subjects under study.
 
--pedfile
 
--pedfile
Pedigree file as described in section 3.
+
Pedigree file for subjects under study.
  
  
 
== FAQ ==
 
== FAQ ==

Revision as of 17:28, 26 April 2010

MaCH (MArkov Chain Haplotyping) is a Hidden Markov Model (HMM) based haplotyper that reconstructs haplotypes from genotypes of unrelated individuals. Three primary utilities of MaCH are (1) to resolve haplotypes from diploid genotypes; (2) impute missing genotypes; and (3) perform disease mapping analysis.

Options

Input Files: --datfile Marker information file for subjects under study. --pedfile Pedigree file for subjects under study.


FAQ