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, 17:47, 26 April 2010
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| Each person contributes to one line in a pedigree file. Required fields are (1) the first five fixed fields corresponding to five key pieces of information (namely: family person father mother sex), and (2) genotype fields. Phenotype fields are allowed inbetween but will not be used by the program. <br> | | Each person contributes to one line in a pedigree file. Required fields are (1) the first five fixed fields corresponding to five key pieces of information (namely: family person father mother sex), and (2) genotype fields. Phenotype fields are allowed inbetween but will not be used by the program. <br> |
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− | <sample.ped> | + | <sample.ped> <br> |
− | fam1 indiv1 0 0 1 0/0 2/3 ./. | + | fam1 indiv1 0 0 1 0/0 2/3 ./. <br> |
− | fam2 indiv2 0 0 2 1/2 2/2 1/4 | + | fam2 indiv2 0 0 2 1/2 2/2 1/4 <br> |
− | <EOF sample.ped> | + | <EOF sample.ped> <br> |
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| This sample.ped contains 2 individuals. The first individual is from family fam1 with person ID indiv1 and no parental information available (father = 0, mother = 0). This person is a male (sex = 1). His genotypes are missing at the first and third markers (0/0 and ./.), and is 2/3 (C/G) at the second marker. Similarly, the second individual is from family fam2 with person ID indiv2 and no parental information available (father = 0, mother = 0). This person is a female (sex = 2). Her genotypes are 1/2 (A/C) at the first locus, 2/2 (Homozygous for C) at the second locus and 1/4 (A/T) at the third locus. | | This sample.ped contains 2 individuals. The first individual is from family fam1 with person ID indiv1 and no parental information available (father = 0, mother = 0). This person is a male (sex = 1). His genotypes are missing at the first and third markers (0/0 and ./.), and is 2/3 (C/G) at the second marker. Similarly, the second individual is from family fam2 with person ID indiv2 and no parental information available (father = 0, mother = 0). This person is a female (sex = 2). Her genotypes are 1/2 (A/C) at the first locus, 2/2 (Homozygous for C) at the second locus and 1/4 (A/T) at the third locus. |