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=== <strong>Optional Input files</strong><br> ====
=== <strong>Optional Input files</strong><br> ===
==== External/reference (e.g., HapMap) input files (snp and haplotype files) are optional. ====
==== External/reference files ====
Mach 1.0 accepts two different formats: MACH format or HapMap format. <br>
External/reference (e.g., HapMap) input files (snp and haplotype files) are optional. Mach 1.0 accepts two different formats: MACH format or HapMap format. <br>
MACH format SNP File
===== MACH format SNP File =====
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One line per SNP and one field (marker name) only.
One line per SNP and one field (marker name) only.
...
...
MACH format Haplotype File
===== MACH format Haplotype File =====
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One line per haplotype. <br>
One line per haplotype. <br>
...
...
HapMap format files can be downloaded from:
===== HapMap format files can be downloaded from: =====
http://hapmap.org/downloads/phasing/2006-07_phaseII/phased/
http://hapmap.org/downloads/phasing/2006-07_phaseII/phased/
