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'''head -1 mldose/chr21.mldose | cut -f3 -d ' ' '''
'''head -1 mldose/chr21.mldose | cut -f3 -d ' ' '''
1.962
'''head -2 mlinfo/chr21.mlinfo '''
'''head -2 mlinfo/chr21.mlinfo '''
SNP Al1 Al2 Freq1 MAF Quality Rsq
rs885550 2 4 0.9840 0.0160 0.9682 0.0021
''' head -1 mlgeno/chr21.mlgeno | cut -f3 -d ' ' '''
''' head -1 mlgeno/chr21.mlgeno | cut -f3 -d ' ' '''
2/2
Based on the three files above, we've confirmed that dosage is the number of AL1 copies: you will only to check for one informative case (i.e, dosage values close to 0 or 2) since it's consistent across all individuals and all SNPs.
Based on the three files above, we've confirmed that dosage is the number of AL1 copies: you will only to check for one informative case (i.e, dosage values close to 0 or 2) since it's consistent across all individuals and all SNPs.
'''comb.dat'''<br> M SNP1<br> M SNP2<br> M SNP3<br> M SNP4<br> M SNP5<br>
'''comb.dat'''<br> M SNP1<br> M SNP2<br> M SNP3<br> M SNP4<br> M SNP5<br>
=== '''More questions?''' ===
A: Email Yun Li (yunli@med.unc.edu) or Goncalo Abecasis (goncalo@umich.edu).
== Examples ==
== Examples ==
