View source for MaCH: Pedigree with Integer Allele Codes

For compatibility with older applications that only accept integer allele codes in pedigree files, MaCH can accept pedigree files that encode bases A, C, G, T as 1, 2, 3, 4. Here is an example:

  '''<Example of a pedigree file with numerically coded alleles>'''
  FAM1001   ID1234  0   0   M   1 1   1 2   2 2
  FAM1002   ID5678  0   0   F   1 2   2 2   3 3
  ...
  '''<End of pedigree file>'''

The corresponding base-pair coded pedigree would be:

  '''<Example of a pedigree file with base-pair coded alleles>'''
  FAM1001   ID1234  0   0   M   A A   A C   C C
  FAM1002   ID5678  0   0   F   A C   C C   G G
  ...
  '''<End of pedigree file>'''