Difference between revisions of "MaCH: Pedigree with Integer Allele Codes"
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For compatibility with older applications that only accept integer allele codes in pedigree files, MaCH can accept pedigree files that encode bases A, C, G, T as 1, 2, 3, 4. Here is an example: | For compatibility with older applications that only accept integer allele codes in pedigree files, MaCH can accept pedigree files that encode bases A, C, G, T as 1, 2, 3, 4. Here is an example: | ||
| − | '''<Example of a pedigree file with numerically coded alleles>''' | + | '''<Example of a pedigree file with numerically coded alleles>''' |
| − | FAM1001 ID1234 0 0 M 1 1 1 2 2 2 | + | FAM1001 ID1234 0 0 M 1 1 1 2 2 2 |
| − | FAM1002 ID5678 0 0 F 1 2 2 2 3 3 | + | FAM1002 ID5678 0 0 F 1 2 2 2 3 3 |
| − | ... | + | ... |
| − | '''<End of pedigree file>''' | + | '''<End of pedigree file>''' |
The corresponding base-pair coded pedigree would be: | The corresponding base-pair coded pedigree would be: | ||
| + | |||
| + | '''<Example of a pedigree file with base-pair coded alleles>''' | ||
| + | FAM1001 ID1234 0 0 M A A A C C C | ||
| + | FAM1002 ID5678 0 0 F A C C C G G | ||
| + | ... | ||
| + | '''<End of pedigree file>''' | ||
Latest revision as of 10:24, 4 June 2010
For compatibility with older applications that only accept integer allele codes in pedigree files, MaCH can accept pedigree files that encode bases A, C, G, T as 1, 2, 3, 4. Here is an example:
<Example of a pedigree file with numerically coded alleles> FAM1001 ID1234 0 0 M 1 1 1 2 2 2 FAM1002 ID5678 0 0 F 1 2 2 2 3 3 ... <End of pedigree file>
The corresponding base-pair coded pedigree would be:
<Example of a pedigree file with base-pair coded alleles> FAM1001 ID1234 0 0 M A A A C C C FAM1002 ID5678 0 0 F A C C C G G ... <End of pedigree file>
