MaCH: Pedigree with Integer Allele Codes
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For compatibility with older applications that only accept integer allele codes in pedigree files, MaCH can accept pedigree files that encode bases A, C, G, T as 1, 2, 3, 4. Here is an example:
<Example of a pedigree file with numerically coded alleles> FAM1001 ID1234 0 0 M 1 1 1 2 2 2 FAM1002 ID5678 0 0 F 1 2 2 2 3 3 ... <End of pedigree file>
The corresponding base-pair coded pedigree would be:
