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*Then:
*Then:
@ first = `grep -n rsFIRST orig.snps | cut -f1 -d ':'`
@ first = `grep -nw rsFIRST orig.snps | cut -f1 -d ':'`
@ last = `grep -n rsLAST orig.snps | cut -f1 -d ':'`
@ last = `grep -nw rsLAST orig.snps | cut -f1 -d ':'`
*Finally (assuming the third field contains the actual haplotypes, where alleles are separated by whitespace):
*Finally (assuming the third field contains the actual haplotypes, where alleles are separated by whitespace):
