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== How do I get reference files for an region of interest? ==

== How do I get reference files for an region of interest? ==

1. For HapMapII format, download haplotypes from http://www.sph.umich.edu/csg/ylwtx/HapMapForMach.tgz 2. For MACH format, you can do the following:  

1. For HapMapII format, download haplotypes from http://www.sph.umich.edu/csg/ylwtx/HapMapForMach.tgz <br>

2. For MACH format, you can do the following:  

*First, find the first and last SNP in the region you are interested in. Say "rsFIRST" and "rsLAST", defined according to position.  

*First, find the first and last SNP in the region you are interested in. Say "rsFIRST" and "rsLAST", defined according to position.