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153 bytes added
, 09:34, 9 June 2010
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| # step 2: | | # step 2: |
| mach1 -d sample.dat -p sample.ped -s chr20.snps -h chr20.hap --compact --greedy --autoFlip --errorMap par_infer.erate --crossoverMap par_infer.rec --mle --mldetails > mach.imp.log | | mach1 -d sample.dat -p sample.ped -s chr20.snps -h chr20.hap --compact --greedy --autoFlip --errorMap par_infer.erate --crossoverMap par_infer.rec --mle --mldetails > mach.imp.log |
| + | |
| + | In step2, each individual is imputed independently and can therefore be split into as many as n (sample size) jobs for each chromosome for parallelism. |
| | | |
| == Where can I find combined HapMap reference files? == | | == Where can I find combined HapMap reference files? == |