MaCH Options
From Genome Analysis Wiki
Jump to navigationJump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
greedy
use only the reference haplotypes (fed to -h or --haps) as reference
states S
use a random subset of S haplotypes as reference
sampleInterval SI
output every SI rounds based on random sampling from the last Markov iteration
interimInterval II
output every II rounds by building consensus from all previous Markov iterations