MaCH Options

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Revision as of 02:11, 17 June 2010 by Ylwtx (talk | contribs) (Created page with '== greedy == use only the reference haplotypes (fed to -h or --haps) as reference == states S == use a random subset of S haplotypes as reference == sampleInterval SI == out…')
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greedy

use only the reference haplotypes (fed to -h or --haps) as reference

states S

use a random subset of S haplotypes as reference

sampleInterval SI

output every SI rounds based on random sampling from the last Markov iteration

interimInterval II

output every II rounds by building consensus from all previous Markov iterations