Difference between revisions of "Main Page"
From Genome Analysis Wiki
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# Rare Variant Analysis using [[rvTests]] | # Rare Variant Analysis using [[rvTests]] | ||
# Quality control using [[C++ Executable: fastQValidator|FastQValidator]], [[VerifyBamID]], and [[BamValidator]] | # Quality control using [[C++ Executable: fastQValidator|FastQValidator]], [[VerifyBamID]], and [[BamValidator]] | ||
| − | # File Readers using [[ | + | # File Readers using [[LibStatGen: BAM]] and [[LibStatGen: FASTQ]] |
# File Conversions using [[bam2FastQ]] | # File Conversions using [[bam2FastQ]] | ||
Revision as of 10:11, 3 April 2012
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Abecasis Group Wiki
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Welcome!
Welcome to our brand new wiki!
If you would like to contribute, log-in or request an account. We recommend using your e-mail address or Michigan uniqname as your user id.
For basic instructions, see the Wikipedia Tutorial.
Sequence Analysis Tools
We are developing software tools for the analysis of next generation sequence data.
These tools include:
- Variant Calling with glfSingle, glfTrio and glfMultiples
- Variant Calling and De Novo Mutation Detection in Families with Polymutt
- Variant Annotations using vcfCodingSnps
- Rare Variant Analysis using rvTests
- Quality control using FastQValidator, VerifyBamID, and BamValidator
- File Readers using LibStatGen: BAM and LibStatGen: FASTQ
- File Conversions using bam2FastQ
These tools and additional tools can be found on the Software page.
High Level Tutorials
Some high-level tutorials on the analysis of next generation sequence data:
Projects
SardiNIA - The SardiNIA longitudinal study of aging.
1000 Genomes Project Pilot 1 SNP Calling
Learn Genetics
Faculty in the group teach in a variety of formal and informal settings. Class notes and relevant discussion are archived here.
General Resources
Abecasis Group Meeting
3:00-4:30 p.m. on Mondays, room 2610, SPH I.
