Difference between revisions of "Main Page"
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=== Read Mapping === | === Read Mapping === | ||
| − | [[Karma|Karma]] - Our fast short read aligner | + | [[Karma|Karma]] - Our fast short read aligner, which generates [[Mapping Quality Scores]] |
[[Karma-colorspace|Karma-ColorSpace]] - QUICKSTART on mapping color space reads | [[Karma-colorspace|Karma-ColorSpace]] - QUICKSTART on mapping color space reads | ||
Revision as of 18:40, 17 December 2009
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Abecasis Group Wiki
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Welcome!
Welcome to our brand new wiki!
If you would like to contribute, log-in or create an account. We recommend using your e-mail address or Michigan uniqname as your user id.
For basic instructions, see the Wikipedia Tutorial.
Sequence Analysis Tools
We are developing several tools for the analysis of next generation sequence data.
Read Mapping
Karma - Our fast short read aligner, which generates Mapping Quality Scores
Karma-ColorSpace - QUICKSTART on mapping color space reads
Examples - Sample command lines with discussion
Variant Calling
glfSingle - Variant calling for a single, deeply sequenced individual
glfTrio - Variant calling for a single, deeply sequenced nuclear family with two parents and one child
glfMultiples -- Variant calling for multiple, unrelated individuals
Variant Annotation
vcfCodingSnps -- Annotate coding variants in a VCF file.
Projects
SardiNIA - The SardiNIA longitudinal study of aging.
