Difference between revisions of "Main Page"
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[[SardiNIA]] - The SardiNIA longitudinal study of aging. | [[SardiNIA]] - The SardiNIA longitudinal study of aging. | ||
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| + | == Learn Genetics == | ||
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| + | Faculty in the group teach in a variety of formal and informal settings. Class notes and relevant discussion are archived here. | ||
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| + | === BIOSTAT 666: Statistical and Numerical Methods in Human Genetics === | ||
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| + | Gene mapping studies aim to study the relationship between genetic variation and susceptibility to human disease. | ||
| + | These studies can be used to elucidate the biochemical basis of medically interesting traits leading to knowledge | ||
| + | that will, ultimately, help us improve treatment and management of human disease. | ||
| + | |||
| + | Biostatistics 666 is a Masters level course that introduces many of the numerical methods and concepts useful for | ||
| + | these types of study. [[666 Class Notes|Class Notes]] for this course posted in the wiki. | ||
Revision as of 23:28, 6 January 2010
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Abecasis Group Wiki
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Welcome!
Welcome to our brand new wiki!
If you would like to contribute, log-in or create an account. We recommend using your e-mail address or Michigan uniqname as your user id.
For basic instructions, see the Wikipedia Tutorial.
Sequence Analysis Tools
We are developing several tools for the analysis of next generation sequence data.
Read Mapping
Karma - Our fast short read aligner, which generates Mapping Quality Scores
Karma-ColorSpace - QUICKSTART on mapping color space reads
Examples - Sample command lines with discussion
Variant Calling
glfSingle - Variant calling for a single, deeply sequenced individual
glfTrio - Variant calling for a single, deeply sequenced nuclear family with two parents and one child
glfMultiples -- Variant calling for multiple, unrelated individuals
Variant Annotation
vcfCodingSnps -- Annotate coding variants in a VCF file.
Projects
SardiNIA - The SardiNIA longitudinal study of aging.
Learn Genetics
Faculty in the group teach in a variety of formal and informal settings. Class notes and relevant discussion are archived here.
BIOSTAT 666: Statistical and Numerical Methods in Human Genetics
Gene mapping studies aim to study the relationship between genetic variation and susceptibility to human disease. These studies can be used to elucidate the biochemical basis of medically interesting traits leading to knowledge that will, ultimately, help us improve treatment and management of human disease.
Biostatistics 666 is a Masters level course that introduces many of the numerical methods and concepts useful for these types of study. Class Notes for this course posted in the wiki.
