Difference between revisions of "Main Page"

Revision as of 10:52, 13 January 2010

Abecasis Group Wiki

Welcome to our brand new wiki!

If you would like to contribute, log-in or create an account. We recommend using your e-mail address or Michigan uniqname as your user id.

For basic instructions, see the Wikipedia Tutorial.

We are developing several tools for the analysis of next generation sequence data.

Karma - Our fast short read aligner, which generates Mapping Quality Scores

Karma-ColorSpace - QUICKSTART on mapping color space reads

Examples - Sample command lines with discussion

glfSingle - Variant calling for a single, deeply sequenced individual

glfTrio - Variant calling for a single, deeply sequenced nuclear family with two parents and one child

glfMultiples -- Variant calling for multiple, unrelated individuals

vcfCodingSnps -- Annotate coding variants in a VCF file.

FastQ Validator -- Check that a FASTQ file conforms to specification.

SardiNIA - The SardiNIA longitudinal study of aging.

Faculty in the group teach in a variety of formal and informal settings. Class notes and relevant discussion are archived here.

@@ Line 42: / Line 42: @@
 === Miscellaneous Utilities ===
-[[FastQ validator]] -- Check that a FASTQ file conforms to specification.
+[[FastQ Validator]] -- Check that a FASTQ file conforms to specification.
 == Projects ==