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Abecasis Group Wiki

Welcome!

Welcome to our brand new wiki!

For basic instructions, see [the Wikipedia Tutorial].

Sequence Analysis Tools

We are developing several tools for the analysis of next generation sequence data.

Read Mapping

Karma - Our fast short read aligner

Karma-ColorSpace - QUICKSTART on mapping color space reads

Variant Calling

glfSingle - Variant calling for a single, deeply sequenced individual glfTrio - Variant calling for a single, deeply sequence nuclear family with two parents and one child glfMultiples -- Variant calling for multiple, unrelated individuals