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Abecasis Group Wiki
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Sequence Analysis Tools
We are developing several tools for the analysis of next generation sequence data.
Read Mapping
Karma - Our fast short read aligner
Karma-ColorSpace - QUICKSTART on mapping color space reads
Variant Calling
glfSingle - Variant calling for a single, deeply sequenced individual
glfTrio - Variant calling for a single, deeply sequenced nuclear family with two parents and one child
glfMultiples -- Variant calling for multiple, unrelated individuals