1,555
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Performance
== Performance ==
== Performance ==
A good rule of thumb is that minimac should take about 1 hour to impute 1,000,000 markers in 1,000 individuals using a reference panel with 100 haplotypes. Performance should increase linearly with respect to all these factors. So, if you have M markers to impute in N individuals and a reference panel with H haplotypes, your approximate computing time in hours should be about M * N * H * 10^-11. These statistics refer to Intel X7460 CPU running at 2.66 GHz and your mileage may vary; most modern CPUs should be no more than a few times faster (or slower) than that.
A good rule of thumb is that minimac should take about 1 hour to impute 1,000,000 markers in 1,000 individuals using a reference panel with 100 haplotypes. Performance should increase linearly with respect to all these factors. So, if you have M markers to impute in N individuals and a reference panel with H haplotypes, your approximate computing time in hours should be about M * N * H * 10<sup>-11</sup>. These statistics refer to Intel X7460 CPU running at 2.66 GHz and your mileage may vary; most modern CPUs should be no more than a few times faster (or slower) than that.
== Release Date ==
== Release Date ==
