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= Download =
= Download =
A full release of <code>minimac</code> is expected here in October 2010. In the meantime, a binary only Linux version of minimac is available [http://www.sph.umich.edu/csg/cfuchsb/minimac-beta-static-2010.10.12.tar.gz from here] for those who are eager to try it out. If you use this beta version, please be sure to stop by the [http://www.sph.umich.edu/csg/abecasis/MaCH/download/ MaCH download page] and fill out the registration form, so that we can let you know when an official release is available.
A full release of <code>minimac</code> is expected here soon. In the meantime, a binary only Linux version of minimac is available [http://www.sph.umich.edu/csg/cfuchsb/minimac-beta-static-2010.10.12.tar.gz from here] for those who are eager to try it out. If you use this beta version, please be sure to stop by the [http://www.sph.umich.edu/csg/abecasis/MaCH/download/ MaCH download page] and fill out the registration form, so that we can let you know when an official release is available.
== Multiprocessor Version ==
== Multiprocessor Version ==
| Reduce memory use at the cost of approximately doubling runtime. This option is recommended for most GWAS scale datasets and computing platforms.
| Reduce memory use at the cost of approximately doubling runtime. This option is recommended for most GWAS scale datasets and computing platforms.
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==== Build 36 / Build 37 ====
The 1000G June reference panel is on build 36, future 1000G reference panels will be on build 37. This has also some impact on the pre-phasing:
your data must be on the correct build, or in other words, all SNPs must be ordered correctly based on the used build. Therefore, if you want to use your pre-phased data to impute into build 36 and build 37 reference panels, you have to exclude all SNPs that change order (MaCH does not use genomic coordinates).
== Imputation into Phased Haplotypes ==
== Imputation into Phased Haplotypes ==
