550
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
## For males
## For males
### Remove the pseudo-autosomal part (for build hg18: chrX:1-2709520 and chrX:154584238-154913754 ; for build hg19 chrX:1-2709520 and chrX:154584238-154913754 )
### Remove the pseudo-autosomal part (for build hg18: chrX:1-2709520 and chrX:154584238-154913754 ; for build hg19 chrX:1-2709520 and chrX:154584238-154913754 )
### Convert the pedigree file into a MaCH haplotype file (missing genotypes should be encoded as: "0" or "." or "N" )
### Convert the pedigree file into a MaCH haplotype file (missing genotypes should be encoded as: "0" or "." or "N" ) and impute using minimac as described above.
:::: '''<Example of a pedigree file >'''
:::: '''<Example of a pedigree file >'''
:::: '''<End of the corresponding haplotype file>'''
:::: '''<End of the corresponding haplotype file>'''
