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3 bytes added
, 11:32, 4 February 2011
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| ## For females: follow the same protocol as for autosomes (phase with MaCH and impute with minimac). | | ## For females: follow the same protocol as for autosomes (phase with MaCH and impute with minimac). |
| ## For males | | ## For males |
− | ### Remove the pseudo-autosomal part (for build hg18: chrX:1-2709520 and chrX:154584238-154913754 ; for build hg19 chrX:1-2709520 and chrX:154584238-154913754 ) | + | ### Remove the pseudo-autosomal part (for build hg18: chrX:1-2709520 and chrX:154584238-154913754 ; for build hg19 chrX:60001-2699520 and chrX:154931044-155260560) |
| ### Convert the pedigree file into a MaCH haplotype file (missing genotypes should be encoded as: "0" or "." or "N" ) and impute using minimac as described above. | | ### Convert the pedigree file into a MaCH haplotype file (missing genotypes should be encoded as: "0" or "." or "N" ) and impute using minimac as described above. |
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