From Genome Analysis Wiki
Jump to navigationJump to search
61 bytes added
, 06:36, 26 April 2011
Line 27: |
Line 27: |
| |- | | |- |
| | 200 states | | | 200 states |
− | | 12 min = (3 min * 2^2) | + | | 12 min = (3 min * 2<sup>2</sup>) |
| |- | | |- |
| | 400 states | | | 400 states |
− | | 48 min = (3 min * 4^2) | + | | 48 min = (3 min * 4<sup>2</sup>) |
| |- | | |- |
| | 500 states | | | 500 states |
− | | 75 min = (3 min * 5^2) | + | | 75 min = (3 min * 5<sup>2</sup>) |
| |} | | |} |
| | | |
| So, in this case running haplotyping with 500 states and 10 rounds would require 75 min * 10 = 750 min. | | So, in this case running haplotyping with 500 states and 10 rounds would require 75 min * 10 = 750 min. |
| | | |
− | Typically, haplotype quality improves rapidly with the number of states but only slowly with the number of rounds. We recommend running ~20 rounds of the MaCH haplotyper and selecting a number of states as high as your patience will allow. | + | Typically, haplotype quality improves rapidly with the number of states but only slowly with the number of rounds. We recommend running ~20 rounds of the MaCH haplotyper and selecting a number of states as high as your patience will allow (but ideally greater than 200). |
| | | |
| == Imputation == | | == Imputation == |