Changes

=== Creating SNP List File ===

=== Creating SNP List File ===

'''Minimac''' requires a file listing markers in the haplotype file. This file can be easily generated by extracting the first column from the .info file created during the MaCH haplotyping process. In a standard Unix system, a command like this should do:

'''Minimac''' requires a file listing markers in the haplotype file. This file can be easily generated by extracting the second column from the .dat file. In a standard Unix system, a command like this should do:

   cut -f 1 target.info > target.snps

   cut -f 1 target.info > target.snps