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57 bytes added
, 09:44, 30 May 2012
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| == using a VCF reference panel == | | == using a VCF reference panel == |
| minimac --vcfReference --refHaps ref.vcf.gz --refSnps ref.snps.gz --haps target.hap.gz --snps target.snps.gz --rounds 5 --states 200 --prefix results | | minimac --vcfReference --refHaps ref.vcf.gz --refSnps ref.snps.gz --haps target.hap.gz --snps target.snps.gz --rounds 5 --states 200 --prefix results |
− | Note: GWAS SNPs (file --snps target.snps.gz) have to be in the chr:pos format e.g. 1:1000 and on build37/hg19 | + | Note: GWAS SNPs (file --snps target.snps.gz) are by default expected to be in the chr:pos format e.g. 1:1000 and on build37/hg19; otherwise, please set the --rs flag |
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