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7 bytes added
, 06:52, 7 October 2010
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| --snps target.snps | | --snps target.snps |
| Target snps (from the pre-phasing step) | | Target snps (from the pre-phasing step) |
− | --rounds R | + | --rounds [5] |
| how many rounds should be run to optimize the model parameters: (i) error rate for each marker (*.erate) and (ii) crossover rates (*.rec) for each interval. | | how many rounds should be run to optimize the model parameters: (i) error rate for each marker (*.erate) and (ii) crossover rates (*.rec) for each interval. |
− | --states S | + | --states [200] |
− | how many haplotypes to use for parameter optimization | + | how many haplotypes to use for parameter optimization. |
| --em | | --em |
| use an e-m algorithm, instead of mcmc, for parameter optimization | | use an e-m algorithm, instead of mcmc, for parameter optimization |