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Minimac (view source)

Revision as of 10:12, 5 August 2011

222 bytes removed ,  10:12, 5 August 2011
→‎NCBI build 36 / NCBI build 37
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The 1000G June reference panel is on build 36, future 1000G reference panels will be on build 37. This has also some impact on the pre-phasing:
 
The 1000G June reference panel is on build 36, future 1000G reference panels will be on build 37. This has also some impact on the pre-phasing:
 
some SNPs will ordered differently in each genome build (we expect order will be more accurate in more recent builds!). Purists will claim that imputation using NCBI build 36 and NCBI build 37 reference panels requires phasing using the exact same reference panel -- others will claim this makes little difference.
 
some SNPs will ordered differently in each genome build (we expect order will be more accurate in more recent builds!). Purists will claim that imputation using NCBI build 36 and NCBI build 37 reference panels requires phasing using the exact same reference panel -- others will claim this makes little difference.
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For convenience, a list of SNPs whose order varies between builds in the Metabochip is available from  [http://www.sph.umich.edu/csg/cfuchsb/metab_order_changed.txt List of Metabochip SNPs Whose Order Changes With Build]
      
=== Running MaCH ===
 
=== Running MaCH ===
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/3480"

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