550
edits
Changes
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## For males
## For males
### Remove the pseudo-autosomal part (for build hg18: chrX:1-2709520 and chrX:154584238-154913754 ; for build hg19 chrX:1-2709520 and chrX:154584238-154913754 )
### Remove the pseudo-autosomal part (for build hg18: chrX:1-2709520 and chrX:154584238-154913754 ; for build hg19 chrX:1-2709520 and chrX:154584238-154913754 )
### Convert the pedigree file in a MaCH haplotype file (missing genotypes should be encoded as: '0' or '.' or 'N' )
### Convert the pedigree file into a MaCH haplotype file (missing genotypes should be encoded as: "0" or "." or "N" )
### Impute using minimac as described above.
### Impute using minimac as described above.
