Minimac2

minimac2 is an improved version of Minimac. It is designed to work on phased genotypes and can handle very large reference panels with hundreds or thousands of haplotypes. The name has two parts. The first, "mini", refers to the modest amount of computational resources it requires. The second, "mac", is short hand for MaCH, our widely used algorithm for genotype imputation.

There are several minimac(2) related pages on this wiki. The major ones are:

• Minimac2 - This page, the main minimac page.
• Minimac - Previous version.
• Minimac: Tutorial - A short minimac(2) tutorial.
• Minimac: 1000 Genomes Imputation Cookbook - Cookbook instructions for 1000 Genomes Imputation with Minimac(2)
• Minimac Command Reference - Summary of minimac(2) options
• Minimac Diagnostics - Summary of diagnostics for imputation performance generated by minimac(2)

• We are happy to run imputation (and pre-phasing) for you: try our Imputation server

Download

Compiled:

Source code:

Questions and Comments

Please contact Goncalo Abecasis or Christian Fuchsberger.

Questions and Comments

Please contact Goncalo Abecasis or Christian Fuchsberger.

Related Pages

If you are looking to learn about small computers made by Apple, Inc., you have come to the wrong page. Try looking at http://www.apple.com/macmini/, instead.

If you are looking for a low calorie version of the Big Mac sandwich, you'll be sad to know the Mini Mac has been discontinued. However, you are not the only one who likes the idea of a Mini Mac and you'll probably find some company on the web [1].