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Revision as of 23:13, 29 January 2015
, 23:13, 29 January 2015→Full List of Options
= Introduction =
[http://genome.sph.umich.edu/wiki/Minimac3 '''Minimac3 '''] is a lower memory and more computationally efficient implementation of [http://genome.sph.umich.edu/wiki/Minimac2 minimac2]. It is an algorithm for genotypic imputation that works on phased genotypes (say from [http://genome.sph.umich.edu/wiki/MaCH MaCH]) and is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy.
This wiki page gives users '''a full list of all the available options on Minimac3'''.
= Full List of Options =
= Full List of Options =
The following table gives a brief description of all the parameters of '''Minimac3'''. A more detailed description would be available soon.
The following table gives a brief description of all the parameters of '''Minimac3'''. A detailed description would be available soon.
{| border="1" cellpadding="2"
{| border="1" cellpadding="2"
| Percentage probability of sending SUCCESS/FAILURE status of the execution to home server [Default: 50%]
| Percentage probability of sending SUCCESS/FAILURE status of the execution to home server [Default: 50%]
|}
|}
= Download =
'''Minimac3 ''' is available as an undocumented release version. The source files (and binary executable) are available for download in [[Minimac3#Download | Source Files]] and commonly used reference panels in VCF and <font face=Courier>M3VCF</font> formats are available for download in [[Minimac3#Reference Panels for Download | Reference Panels]].
= Useful Wiki Pages =
There are a few pages in this Wiki that may be useful to for '''Minimac3''' users. Here are links to a few:
* [[Minimac3| Minimac3 Overview Page]]
* [[Minimac3 Usage | Minimac3 Usage and Documentation]]
* [[Minimac3 Imputation Cookbook]] ('''Recommended for New Users!!''')
* [[Minimac3 Examples| Minimac3 Examples]]
* [[M3VCF Files| M3VCF Files]]
= Contact =
In case of any queries and bugs please contact [mailto:sayantan@umich.edu Sayantan Das].
