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→Usage
Here <font face=Courier>refPanel.m3vcf</font> is the reference panel used in M3VCF format (e.g. 1000 Genomes), <font face=Courier>targetStudy.vcf</font> is the phased GWAS data in VCF format, and <font face=Courier>testRun</font> is the prefix for the output files.
Here <font face=Courier>refPanel.m3vcf</font> is the reference panel used in M3VCF format (e.g. 1000 Genomes), <font face=Courier>targetStudy.vcf</font> is the phased GWAS data in VCF format, and <font face=Courier>testRun</font> is the prefix for the output files.
=== Multi-Threading ===
The following example shows the same analysis as above, but using 5 threads:
minimac4 --refHaps refPanel.m3vcf \
--haps targetStudy.vcf \
--prefix testRun \
--cpus 5
=== Full List of Options ===
Users can always type the following for further support:
Users can always type the following for further support:
minimac4 --help
minimac4 --help
