Difference between revisions of "Minimac4"
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| − | '''Minimac4 ''' is currently available for testing purposes only. Commonly used reference panels in <font face=Courier>M3VCF</font> format are available for download in [[#Reference Panels for Download | Reference Panels]]. | + | '''Minimac4 ''' is currently available for testing purposes only (while we still run more tests and wait on feedback about potential bugs). Commonly used reference panels in <font face=Courier>M3VCF</font> format are available for download in [[#Reference Panels for Download | Reference Panels]]. |
The Minimac3 mailing list has been renamed as the Minimac4 mailing list. If you were already a member, no need to re-join. If not, please join our [https://groups.google.com/forum/embed/?place=forum/minimac4-help&umich.edu| mailing list] to get updates about future releases or report possible bugs or email them to [mailto:sayantan@umich.edu Sayantan Das].''' | The Minimac3 mailing list has been renamed as the Minimac4 mailing list. If you were already a member, no need to re-join. If not, please join our [https://groups.google.com/forum/embed/?place=forum/minimac4-help&umich.edu| mailing list] to get updates about future releases or report possible bugs or email them to [mailto:sayantan@umich.edu Sayantan Das].''' | ||
Revision as of 21:31, 29 June 2017
Introduction
Minimac4 is a latest version in the series of genotype imputation software - preceded by Minimac3 (2015), Minimac2 (2014), minimac (2012) and MaCH (2010). Minimac4 is a lower memory and more computationally efficient implementation of the original algorithms with negligible fall in imputation quality.
Download
Minimac4 is currently available for testing purposes only (while we still run more tests and wait on feedback about potential bugs). Commonly used reference panels in M3VCF format are available for download in Reference Panels.
The Minimac3 mailing list has been renamed as the Minimac4 mailing list. If you were already a member, no need to re-join. If not, please join our mailing list to get updates about future releases or report possible bugs or email them to Sayantan Das.
VERSION: 1.0.1 !!! (Updated 12.1.2016) !!!
Github Repo: Users can clone from github repository as well : Minimac4 Github
Cloning from GitHub is recommened so that updates can be easily pulled back !!!
Reference Panels for Download
Some commonly used reference panels are available for download here:
| Reference Panel | Number of Samples |
File Format | Parameter Estimates Available |
Chromosomes | Link |
|---|---|---|---|---|---|
| 1000 Genomes Phase 3 |
2,504 | VCF | - | 1-22,X | Download |
| M3VCF | YES | 1-22,X | Download | ||
| NO | 1-22,X | Download | |||
| VCF,M3VCF | YES | X | Download | ||
| 1000 Genomes Phase 1 |
1,092 | VCF | - | 1-22,X | Download |
| M3VCF | YES | 1-22,X | Download | ||
| NO | 1-22,X | Download | |||
| VCF,M3VCF | YES | X | Download |
