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Revision as of 19:17, 27 August 2012
, 19:17, 27 August 2012→X Chromosome Imputation
minimac (version 8.15.12 or newer) supports the imputation of genotypes on the X chromosome
minimac (version 8.15.12 or newer) supports the imputation of genotypes on the X chromosome
(reference haplotypes can be found [ftp://share.sph.umich.edu/1000genomes/fullProject/2012.03.14/GIANT.chrX.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz here])
(reference haplotypes can be found [ftp://share.sph.umich.edu/1000genomes/fullProject/2012.03.14/GIANT.chrX.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz here])
X chromosome imputation consists of the following 3 steps:
=== 1. Split X chromosome pedigree file by sex ===
=== 1. Split X chromosome pedigree file by sex ===
