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64 bytes added
, 18:13, 6 August 2012
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| Impute females and males separately | | Impute females and males separately |
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− | minimac --refHaps chrX.no.auto.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz --vcfReference --haps females.hap --snps females.snps | + | minimac --refHaps chrX.no.auto.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz --vcfReference |
− | minimac --refHaps chrX.no.auto.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz --vcfReference --haps males.hap --snps males.snps | + | --haps females.hap --snps females.snps |
| + | minimac --refHaps chrX.no.auto.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz --vcfReference |
| + | --haps males.hap --snps males.snps |
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| === 3. Impute pseudo-autosomal part by sex === | | === 3. Impute pseudo-autosomal part by sex === |
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| Impute females and males separately | | Impute females and males separately |
| | | |
− | minimac --refHaps chrX.auto.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz --vcfReference --haps females.hap --snps females.snps | + | minimac --refHaps chrX.auto.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz --vcfReference |
− | minimac --refHaps chrX.auto.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz --vcfReference --haps males.hap --snps males.snps | + | --haps females.hap --snps females.snps |
| + | minimac --refHaps chrX.auto.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz --vcfReference |
| + | --haps males.hap --snps males.snps |
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| == Imputation quality evaluation == | | == Imputation quality evaluation == |