From Genome Analysis Wiki
Jump to navigationJump to search
6 bytes added
, 16:19, 3 October 2012
Line 291: |
Line 291: |
| chunksize=7000000 | | chunksize=7000000 |
| overlap=250000 | | overlap=250000 |
− | vcfref="yourvcfref.vcf" | + | vcfref="your_vcf_ref.vcf" |
− | gwas="yourgwasfilename" | + | gwas="your_gwas_filename" |
− | out="youroutputfilename" | + | out="your_output_filename" |
| | | |
| for start in `seq 0 $chunksize $chromend` | | for start in `seq 0 $chunksize $chromend` |