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Jump to navigationJump to searchPolymutt: a tool for calling polymorphism and de novo mutations in families for sequencing data (view source)
Revision as of 18:30, 18 June 2011
, 18:30, 18 June 2011→Other options
Some of command line options are explained below and others are self-explanatory.
Some of command line options are explained below and others are self-explanatory.
-c : minimum cutoff of posterior probability to output a variant ['''Default: 0.5''']
-c : minimum cutoff of posterior probability to output a variant [''Default: 0.5'']
--theta : scaled mutation rate per site [''Default: 0.001'']
--theta : scaled mutation rate per site [''Default: 0.001'']
--tstv: prior of ts:tv ratio [''Default: 2.0'']
--tstv: prior of ts:tv ratio [''Default: 2.0'']
