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Jump to navigationJump to searchPolymutt: a tool for calling polymorphism and de novo mutations in families for sequencing data (view source)
Revision as of 18:33, 18 June 2011
, 18:33, 18 June 2011→Other options
--de_novo : a boolean flag to turn on ''de novo'' mutation detection. The following options take effect only when this flag is ON
--de_novo : a boolean flag to turn on ''de novo'' mutation detection. The following options take effect only when this flag is ON
--rate_denovo : mutation rate per haplotype per generation. [''Default: 1e-08'']
--rate_denovo : mutation rate per haplotype per generation. [''Default: 1.5e-08'']
--tstv_denovo : the prior ts/tv ratio of ''de novo'' mutations. [''Default: 2.0'']
--tstv_denovo : the prior ts/tv ratio of ''de novo'' mutations. [''Default: 2.0'']
--min_denovo_LLR : minimum value of log10 likelihood ratio of allowing vs. disallowing ''de novo'' mutations in the data to output [''Default: 1.0'']
--min_denovo_LLR : minimum value of log10 likelihood ratio of allowing vs. disallowing ''de novo'' mutations in the data to output [''Default: 1.0'']
