Changes

* Input file options :

* Input file options :

BAM files are compress by BGZF algorithm and it should contain EOF by default. QPLOT will by default stop working when it does not found a valid EOF tag inside BAM files.  

BAM files are compressed using BGZF and should contain the EOF indicator by default. QPLOT will, by default, stop working if it does not find a valid EOF indicator inside the BAM files.  

However, you can force QPLOT to continue process using --noeof. But you should be aware the input files may be corrupted.

However, you can force QPLOT to continue processing BAM files without an EOF indicator using --noeof. But you should be aware the input files may be corrupted.