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== Usage ==
 
== Usage ==
The code is now deposited into the pipeline. If you have not seen it in your pipeline, you shall update you pipeline. See [[pipeline and git]].
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Go to qplot and make will create an executable qplot in the qplot sub-directory. Here is the qplot help page
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In the pipeline folder, go to qplot and make will create an executable qplot in the qplot sub-directory. Here is the qplot help page
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   linux_host > ./qplot
 
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   wonderland > ./qplot
   
   The following parameters are available.  Ones with "[]" are in effect:
 
   The following parameters are available.  Ones with "[]" are in effect:
 
               References : --reference [/data/local/ref/karma.ref/human.g1k.v37.umfa],
 
               References : --reference [/data/local/ref/karma.ref/human.g1k.v37.umfa],
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