From Genome Analysis Wiki
Jump to navigationJump to search
1 byte added
, 11:45, 16 February 2012
Line 176: |
Line 176: |
| == Built-in example == | | == Built-in example == |
| | | |
− | In the pre-compiled binary download, you will find a subdirectory named examples. We provide a sample file from the 1000 Genome project, it contains aligned reads on chromosome 20 from position 8 Mbp to 9Mbp. You can invoke qplot using the following commandline: | + | In the pre-compiled binary download, you will find a subdirectory named examples. We provide a sample file from the 1000 Genome project, it contains aligned reads on chromosome 20 from position 8 Mbp to 9Mbp. You can invoke qplot using the following command line: |
| | | |
| ../bin/qplot --reference ../data/human.g1k.v37.umfa --dbsnp ../data/dbSNP130.UCSC.coordinates.tbl --gccontent ../data/human.g1k.w100.gc --plot qplot.pdf --stats qplot.stats --Rcode qplot.R --label "chr20:9M-10M" chrom20.9M.10M.bam | | ../bin/qplot --reference ../data/human.g1k.v37.umfa --dbsnp ../data/dbSNP130.UCSC.coordinates.tbl --gccontent ../data/human.g1k.w100.gc --plot qplot.pdf --stats qplot.stats --Rcode qplot.R --label "chr20:9M-10M" chrom20.9M.10M.bam |