Changes

QPLOT (view source)

45 bytes added , 10:27, 1 June 2012

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some_linux_host > qplot/bin/qplot

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~~The following parameters are available. Ones with "[]" are in effect:~~

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References : --reference [/~~data~~/~~local~~/~~ref~~/~~karma.ref~~/human.g1k.v37.~~umfa~~],

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References : --reference [/net/fantasia/home/zhanxw/software/qplot/data/human.g1k.v37.fa],

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--dbsnp [/home/~~bingshan~~/~~data~~/db/~~dbSNP~~/dbSNP130.UCSC.coordinates.tbl],

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--dbsnp [/net/fantasia/home/zhanxw/software/qplot/data/dbSNP130.UCSC.coordinates.tbl],

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--gccontent [/home/~~bingshan~~/~~data~~/db/~~gcContent~~/~~gcContent~~.~~hg37~~.~~w250~~.~~out~~]

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--gccontent [/net/fantasia/home/zhanxw/software/qplot/data/human.g1k.w100.gc]

Create gcContent file : --create_gc [], --winsize [100]

Region list : --regions [], --invertRegion

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Records to process : --first_n_record [-1]

Lanes to process : --lanes []

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Read group to process : --readGroup []

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Input file options : --noeof

Output files : --plot [], --stats [], --Rcode []

Plot labels : --label [], --bamLabel []

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