Difference between revisions of "RAREFY COMMAND"
From Genome Analysis Wiki
Jump to navigationJump to searchShuang Feng (talk | contribs) (→--dat) |
Shuang Feng (talk | contribs) |
||
| Line 14: | Line 14: | ||
===--dat=== | ===--dat=== | ||
followed by the file name of your [http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html MERLIN format DAT] file. | followed by the file name of your [http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html MERLIN format DAT] file. | ||
| + | |||
| + | ==Methods== | ||
Revision as of 19:33, 16 February 2015
Options:
Input Files : --ped [], --dat []
Methods : --MCMC, --traitIncreasing, --traitDecreasing
Trait : --inverseNormal, --useCovariates, --traitName []
Parameters : --maf [1.0e-03], --effect [1.00]
MCMC : --seed, --chains [3], --iterations [50000000]
Other : --famList [], --famID [], --cpus [5], --prefix []
Input Files
--ped
followed by the file name of yourMERLIN format PED file.
--dat
followed by the file name of your MERLIN format DAT file.
