Difference between revisions of "RAREFY COMMAND"

From Genome Analysis Wiki
Jump to: navigation, search
(Created page with " Options: Input Files : --ped [], --dat [] Methods : --MCMC, --traitIncreasing, --traitDecreasing Trait : --inverseNormal, --useCovariates, --traitName [] ...")
 
(--ped)
Line 10: Line 10:
 
==Input Files==
 
==Input Files==
 
===--ped===
 
===--ped===
followed by the file name of your MERLIN format PED file.  
+
followed by the file name of your[http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html  MERLIN format PED] file.
 +
 
 
===--dat===
 
===--dat===
 
followed by the file name of your MERLIN format DAT file.
 
followed by the file name of your MERLIN format DAT file.

Revision as of 19:33, 16 February 2015

Options:
  Input Files : --ped [], --dat []
      Methods : --MCMC, --traitIncreasing, --traitDecreasing
        Trait : --inverseNormal, --useCovariates, --traitName []
   Parameters : --maf [1.0e-03], --effect [1.00]
         MCMC : --seed, --chains [3], --iterations [50000000]
        Other : --famList [], --famID [], --cpus [5], --prefix []

Input Files

--ped

followed by the file name of yourMERLIN format PED file.

--dat

followed by the file name of your MERLIN format DAT file.