Difference between revisions of "RAREFY DOCUMENTATION"

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(INPUT FILE FORMAT)
(INPUT FILE FORMAT)
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==INPUT FILE FORMAT==
 
==INPUT FILE FORMAT==
 
*'''RAREFY''' takes [http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html MERLIN format PED/DAT files] as input, no MAP file is needed.
 
*'''RAREFY''' takes [http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html MERLIN format PED/DAT files] as input, no MAP file is needed.
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*Input files should have pedigree information, phenotype, and covariates information (if covariates are to be adjusted) saved.
  
 
==SOFTWARE INTERFACE==
 
==SOFTWARE INTERFACE==
  
 
==EXAMPLES==
 
==EXAMPLES==

Revision as of 14:31, 3 February 2015

KEY FEATURES

  • RAREFY is a likelihood-based method to prioritize individuals in family samples and population samples.
  • RAREFY takes account familial relatedness and allows adjusting covariates.
  • RAREFY is able to handle large and complex pedigrees.

INPUT FILE FORMAT

  • RAREFY takes MERLIN format PED/DAT files as input, no MAP file is needed.
  • Input files should have pedigree information, phenotype, and covariates information (if covariates are to be adjusted) saved.

SOFTWARE INTERFACE

EXAMPLES