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, 19:37, 16 February 2015
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| *To inverse Normalize the phenotype before analysis: | | *To inverse Normalize the phenotype before analysis: |
| rarefy --ped your.ped --dat your.dat --traitIncreasing --traitDecreasing --inverseNormal --prefix your.output.prefix | | rarefy --ped your.ped --dat your.dat --traitIncreasing --traitDecreasing --inverseNormal --prefix your.output.prefix |
| + | *To inverse Normalize the phenotype and then adjust covariates saved in PED/DAT file before RAREFY analysis: |
| + | rarefy --ped your.ped --dat your.dat --traitIncreasing --traitDecreasing --inverseNormal --useCovariates --prefix your.output.prefix |
| *To analyze only a subset of families in the sample: | | *To analyze only a subset of families in the sample: |
| rarefy --ped your.ped --dat your.dat --traitIncreasing --traitDecreasing --famList your.file.with.famID --prefix your.output.prefix | | rarefy --ped your.ped --dat your.dat --traitIncreasing --traitDecreasing --famList your.file.with.famID --prefix your.output.prefix |