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[[Category:Software]]
[[Category:Software]]
'''rareMETAL''' is a program that facilitates the meta-analysis of rare variants from genotype arrays or sequencing (manuscript in preparation). It was developed by Shuang Feng, Dajiang Liu and Gonçalo Abecasis. Currently, rareMETAL is being used for the analyses in Exomechip lipids consortium and [[EMADS|EMADS]].
[[Category:RAREMETAL]]
'''RAREMETAL''' is a program that facilitates the meta-analysis of rare variants from genotype arrays or sequencing (manuscript in preparation).
It was developed by [[Shuang_Feng|Shuang Feng]], Dajiang Liu and Gonçalo R. Abecasis. RAREMETAL has been used for the analyses in Exomechip blood lipids consortium and [[EMADS|EMADS]].
If you feel the program is useful, please take one minute to tell us your name and email ([https://docs.google.com/spreadsheet/ccc?key=0AuYjznTeEDYudFpqUk9sQ2pkN3d3endjYldqMEp6ZUE&usp=sharing '''registration''']). Thank you!
For questions please contact Andy Boughton via email: abought at umich dot edu.
== Useful Wiki Pages ==
== Useful Wiki Pages ==
There are a few pages in this Wiki that may be useful to rareMETAL users. Here are links to a few:
There are a few pages in this Wiki that may be useful to RAREMETAL users. Here are links to a few:
* The [[RAREMETAL Command Reference]]
* The [[RAREMETAL_Documentation|RAREMETAL Documentation]]
* The [[rareMETAL Command Reference]]
* The [[Tutorial:_RAREMETAL|RAREMETAL Tutorial]]
* The [[rareMETAL Documentation]]
* The [[RAREMETAL FAQ]]
* The [[rareMETAL Quick Start|rareMETAL Quick Start Page]] '''Recommended for New Users!!'''
* The [[RAREMETALWORKER | RAREMETALWORKER documentation]]
== Download and Build==
== Download and Build==
To download rareMetal executable and source code with instruction of build, go to [[Rare-Metal#Software_Download_and_Installation |'''DOWNLOAD and COMPILE''']].
To download RAREMETAL executable and source code with instruction of build, go to [[Rare-Metal#Download_and_Installation|'''DOWNLOAD and INSTALLATION''']].
== Related Programs ==
== Related Programs ==
[[RAREMETALWORKER]] is a program that does single variant association for sequencing and genotyping array data and generates summary statistics for meta-analysis in RAREMETAL.
[[LocusZoom]] is a program that facilitates display of genomewide association scan results.
[[LocusZoom]] is a program that facilitates display of genomewide association scan results.
[[METAL]] is a program that facilitates meta-analysis of genomewide scans.
[[METAL]] is a program that facilitates meta-analysis of single-variant genomewide scans.
