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RAREMETALWORKER (view source)

Revision as of 19:22, 16 November 2012

124 bytes removed ,  19:22, 16 November 2012
→‎Other Options
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==== Chromosome X ====
 
==== Chromosome X ====
 
* --xStart and --xEnd specifies the start and end of non-pseudo-autosomal regions on chromosome X. These options should be specified when --fitX is used.  
 
* --xStart and --xEnd specifies the start and end of non-pseudo-autosomal regions on chromosome X. These options should be specified when --fitX is used.  
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==== Other Options ====
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* --LDwindow specifies the size of the window to calculate variants LD matrix. The default is 1MB.
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=== Handling Unrelated Individuals ===
 
=== Handling Unrelated Individuals ===
 
* To let Rare-Metal-Worker handle unrelated individuals, we just have to code the individuals as unrelated in PED file, or each individual belongs to a unique family. Then Rare-Metal-Worker will take care of the rest.
 
* To let Rare-Metal-Worker handle unrelated individuals, we just have to code the individuals as unrelated in PED file, or each individual belongs to a unique family. Then Rare-Metal-Worker will take care of the rest.
Shuang Feng
2,004

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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/5829"

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