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For detailed description of command options, please go to [[RAREMETALWORKER_command_reference | '''command reference''']].
For detailed description of command options, please go to [[RAREMETALWORKER_command_reference | '''command reference''']].
RAREMETALWORKER 0.4.8 -- A Forerunner of RareMetal
RAREMETALWORKER 0.4.9 -- A Forerunner of RareMetal
(c) 2012-2014 Shuang Feng, Dajiang Liu, Goncalo Abecasis
(c) 2012-2014 Shuang Feng, Dajiang Liu, Goncalo Abecasis
Please go to "http://genome.sph.umich.edu/wiki/RAREMETALWORKER#Where_to_Download" for the latest version.
Please go to "http://genome.sph.umich.edu/wiki/RAREMETALWORKER#Where_to_Download" for the latest version.
Options:
Input Files : --ped [], --dat [], --vcf [], --dosage, --noeof
Output Files : --prefix [], --LDwindow [1000000], --zip, --thin,
--labelHits
VC Options : --vcX, --separateX
Trait Options : --makeResiduals, --inverseNormal, --traitName []
Model Options : --recessive, --dominant
Kinship Source : --kinPedigree, --kinGeno, --kinFile [], --kinxFile [],
--kinSave
Kinship Options : --kinMaf [0.05], --kinMiss [0.05]
Chromosome X : --xLabel [X], --xStart [2699520], --xEnd [154931044],
--maleLabel [1], --femaleLabel [2]
others : --cpu [1]
PhoneHome : --noPhoneHome, --phoneHomeThinning [100]
===INPUT FILE FORMAT===
===INPUT FILE FORMAT===
